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Protein Overview: gi|42572475

General Information:
Name(s) found: gi|42572475 [NCBI NR]
Description(s) found:
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  • gi|42572475|ref|NP_974333.1| sequence-specific DNA binding / transcription factor [Arabidopsis thaliana] [NCBI NR]
  • expressed protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Expressed protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: | sequence-specific DNA binding / transcription factor | chr3:6311008-6313187 REVERSE [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • DNA binding / transcription factor [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: | sequence-specific DNA binding transcription factors;sequence-specific DNA binding | chr3:6311002-6313181 REVERSE LENGTH=349 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Sequence-specific DNA binding transcription factor OS=Arabidopsis thaliana GN=At3g18380 PE=2 SV=1 [ARATH-contam.fasta]
  • Isoform of Q8RWJ7, Isoform 2 of Protein SAWADEE HOMEODOMAIN HOMOLOG 2 OS=Arabidopsis thaliana GN=SHH2 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 349 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IEA]
    Biological Process: regulation of transcription, DNA-dependent [IEA]
    Molecular Function: transcription factor activity [IEA]
    sequence-specific DNA binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRPPSNGGP AFRFILPEVT EMEAILLQHN TAMPGRHILE ALADKFSESP ERKGKVVVQF  60
   61 KQIWNWFQNR RYALRARGNK APGKLNVSSM PRMDLPNQMR SVIQPLSVPK TTHMTGNLPG 120
  121 MTPAPSGSLV PGVMRSGSDN SYLEFEAKSA RDGAWYDVQA FLAHRNLEIG DPEVQVRFAG 180
  181 FEVEEDEWIN VKKHVRQRSL PCEASECVAV LAGDLVLCFQ EGKDQALYFD AIVLDAQRRR 240
  241 HDVRGCRCRF LVRYSHDQSE QEIVPLRKIC RRPETDYRLQ QLHNAVNDLA NSNQHQIPAL 300
  301 DAAAKTPLSL PGATVPIVAP ESKDPSLSAT PATLVQPSSN AATVPAGSA

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    SHOWING SINGLE HITS. [ Hide Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..140] FFAS03 1.24 No description for 2da6A was found.
    2 View Details [141..257] MSA 2.010968 View MSA. No confident structure predictions are available.
    3 View Details [258..349] deduced N/A No confident structure predictions are available.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle