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Protein Overview: RAP22_ARATH

General Information:
Name(s) found: RAP22_ARATH [Swiss-Prot]
Description(s) found:
Found 8 descriptions.
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  • Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=1 SV=2 [Swiss-Prot]
    • Organism: Arabidopsis thaliana
    Length: 379 amino acids

    Gene Ontology:
    Cellular Component: nucleus [IC]
    Biological Process: response to hypoxia [IMP]
    regulation of gene expression [IEP]
    regulation of transcription, DNA-dependent [ISS]
    Molecular Function: DNA binding [TAS]
    transcription factor activity [ISS][TAS]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCGGAIISDF IPPPRSLRVT NEFIWPDLKN KVKASKKRSN KRSDFFDLDD DFEADFQGFK  60
   61 DDSAFDCEDD DDVFVNVKPF VFTATTKPVA SAFVSTGIYL VGSAYAKKTV ESAEQAEKSS 120
  121 KRKRKNQYRG IRQRPWGKWA AEIRDPRKGS REWLGTFDTA EEAARAYDAA ARRIRGTKAK 180
  181 VNFPEEKNPS VVSQKRPSAK TNNLQKSVAK PNKSVTLVQQ PTHLSQQYCN NSFDNSFGDM 240
  241 SFMEEKPQMY NNQFGLTNSF DAGGNNGYQY FSSDQGSNSF DCSEFGWSDH GPKTPEISSM 300
  301 LVNNNEASFV EETNAAKKLK PNSDESDDLM AYLDNALWDT PLEVEAMLGA DAGAVTQEEE 360
  361 NPVELWSLDE INFMLEGDF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


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    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..61] MSA 1.075995 View MSA. No confident structure predictions are available.
    2 View Details [62..112] deduced N/A No confident structure predictions are available.
    3 View Details [113..176] PSI-BLAST 23.0 GCC-box binding domain
    4 View Details [177..269] deduced N/A No confident structure predictions are available.
    5 View Details [270..379] MSA 1.116994 View MSA. No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1 No functions predicted.
    2 No functions predicted.
    3
    Term Confidence Notes
  • binding
    		•  0.339357445627225 bayes_pls_golite062009
    4 No functions predicted.
    5 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle