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Protein Overview: gi|63147404, gi|...

General Information:
Name(s) found: gi|63147404 [NCBI NR]
gi|42569006 [NCBI NR]
Description(s) found:
Found 9 descriptions.
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  • gi|63147404|gb|AAY34175.1| At2g12550 [Arabidopsis thaliana] [NCBI NR]
  • gi|42569006|ref|NP_178939.2| ubiquitin-associated (UBA)/TS-N domain-containing protein [Arabidopsis thaliana] [NCBI NR]
    • Organism: Arabidopsis thaliana
    Length: 562 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: protein modification process [IEA]
    Molecular Function: NONE FOUND


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLKVAGTW GGILEVELEN WTLNMLRDEV AKRSGLDPES IKLIFAGKIL KDDGDATLTL  60
   61 SQLGIKENSK ILSCRQAAPE EGKSIMAEEE RARRLSRVKA AATALSKRHA DGSLPIQDYN 120
  121 IELEDQGGHK VQFGTETDQS AAMMGLMLHT KAKSLIEIEM YSDAVEVLAM AEESFLLCDP 180
  181 KILELVDNLP MMEIDIVWCY FLLRDIKCLS DAGVRLVRAR KGLERAHGKD LSRVRLLQAG 240
  241 QSPEMAIYLR LELLEGVVAY HTGQNDKALN ALKSAHAKFL QLQIPDETLS LVMGMGFQEK 300
  301 DAKRALRLNN QDIASSVDFL IEERAKKAQK REQDLQRQSE ILEQKKYGVT PMKKAVDMQM 360
  361 LERLVSIGYA RELAAESLRR NENDIQKALD ILTDPKVNST IQAYIESRKR KRQEQLVGIS 420
  421 VAELVSMGFE RGKATSALEA GGSREDTIQR LLSASVANPG TTTTSVINAT SSTNNVGAES 480
  481 SGFGGGAEQD SEMKDETTDD IANRASTSSD GMEEERDSEI EDEIADEIAR VDALSAYDIN 540
  541 LDKEIEAINE YLAMLDASQE SC

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

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    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..77] PSI-BLAST 13.522879 Solution structure of N-terminal ubiquitin-like domain of human NEDD8 ultimate buster-1
    2 View Details [78..262] deduced N/A No confident structure predictions are available.
    3 View Details [263..331] PSI-BLAST 9.69897 No description for 2daiA was found.
    4 View Details [332..409] PSI-BLAST 9.045757 Solution Structure of RSGI RUH-011, a UBA Domain from Arabidopsis cDNA
    5 View Details [410..476] PSI-BLAST 14.69897 Solution Structure of RSGI RUH-012, a UBA Domain from Mouse cDNA
    6 View Details [477..562] deduced N/A No confident structure predictions are available.

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • binding
    		•  0.0934358341245259 bayes_pls_golite062009
  • protein binding
    		•  0.03789551947602 bayes_pls_golite062009
    2 No functions predicted.
    3 No functions predicted.
    4 No functions predicted.
    5 No functions predicted.
    6 No functions predicted.


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.98

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle