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Protein Overview: gi|42570993

General Information:
Name(s) found: gi|42570993 [NCBI NR]
Description(s) found:
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  • gi|42570993|ref|NP_973570.1| ARPC1A (ACTIN-RELATED PROTEIN C1A); actin binding / nucleotide binding [Arabidopsis thaliana] [NCBI NR]
  • transducin family protein / WD-40 repeat family protein [Arabidopsis thaliana] [nrdb_11152004_Chlamydomonas]
  • Tax_Id=3702 Transducin family protein [EBI-IPI_Arabidopsis_3.11_12-06-2005_reversed.fasta]
  • | Symbols: ARPC1A, ARPC1 | ARPC1/ARPC1A (actin-related protein C1a); nucleotide binding | chr2:13160524-13163946 FORWARD [TAIR_Arabidopsis_na_04-12-2008_con_reversed.fasta]
  • ARPC1A; nucleotide binding [Arabidopsis thaliana] [nr-271106-contam.fasta]
  • | Symbols: ARPC1A, ARPC1 | actin-related protein C1A | chr2:13153447-13156869 FORWARD LENGTH=378 [TAIR_A_Thaliana_10_12-14-2010_reversed.fasta]
  • Actin-related protein C1A OS=Arabidopsis thaliana GN=ARPC1A PE=4 SV=1 [ARATH-contam.fasta]
  • Isoform of O80856, Actin-related protein C1A OS=Arabidopsis thaliana GN=ARPC1A PE=4 SV=1 [ARATH.fasta.20160308]
    • Organism: Arabidopsis thaliana
    Length: 378 amino acids

    Gene Ontology:
    Cellular Component: NONE FOUND
    Biological Process: NONE FOUND
    Molecular Function: actin binding [IEA]


    Sequence:
    Sequence:
    [PDR BLAST]
    [ProtParam] 
          1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVVDVHRFA ESITCHAWSP DLSMVALCPN NTEVHIYKSL SQDHWERLHV LQKHDQIVSG  60
   61 IDWSSKSNKI VTVSHDRNSY VWSLEGAEWV PTLVILRLNR AALCVQWSPK ENKFAVGSGA 120
  121 KTVCICYYEQ ENNWWVSKLI RKRHESSVTS VAWHPNNVLL ATTSTDGKCR VFSTFIKGVD 180
  181 TKYAHYLNGA FFLLKQQILQ LDLSYSWAFG VKWSPSGNTL AYVGHSSMIY FVDDVGPSPL 240
  241 AQSVAFRDLP LRDVLFISEK MVIGVGYDSN PMVFASDDTG IWSFIRYIGE KKAASSNSSY 300
  301 SSQFSEAFGK FYGSQSKSTT ANDASESRGG VHDNCINSIV SLSKAGSPKV MRFSTSGLDG 360
  361 KVAIWDLENM EQELGNQF

    Protein Complex Data

    No complex found for this protein.

    Mass Spectrometry Data

    No mass spectrometry results found for this protein.

    Yeast Two-Hybrid Data

    The following interactions contain this protein:

    NOT SHOWING SINGLE HITS. [ Show Single Hits ]

    [View our yeast two-hybrid interpretation guidelines.]

    No yeast two-hybrid interactions found for this protein.

    Microscopy / Localization Data

    New Feature: Upload Your Own Microscopy Data

    No microscopy data found in the PDR for this protein.

    Protein Structure Data


    [What does the above image mean?]
    [View Top Sequence Alignments] [Show Ginzu Version Information]

    Domains predicted:

    #   Region(s) Method Confidence Match Description
    1 View Details [1..378] PSI-BLAST 47.69897 Arp2/3 complex 41 kDa subunit ARPC1

    Functions predicted (by domain):

    # Gene Ontology predictions
    1
    Term Confidence Notes
  • actin binding
    		•  3.86142918698875 bayes_pls_golite062009
  • cytoskeletal protein binding
    		•  3.1056443224755 bayes_pls_golite062009
  • actin filament binding
    		•  2.0735069176589 bayes_pls_golite062009
  • binding
    		•  1.79788997337153 bayes_pls_golite062009
  • dynein binding
    		•  1.69349714290074 bayes_pls_golite062009
  • protein binding
    		•  1.11897341394404 bayes_pls_golite062009
  • myosin binding
    		•  0.989691178611801 bayes_pls_golite062009
  • tubulin binding
    		•  0.968047176592527 bayes_pls_golite062009
  • microtubule binding
    		•  0.834073483714259 bayes_pls_golite062009
  • transporter activity
    		•  0.692270256454453 bayes_pls_golite062009
    		• 0.45054027253231 bayes_pls_golite062009
  • myosin II binding
    		•  0.33142771724387 bayes_pls_golite062009
  • myosin heavy chain kinase activity
    		•  0.231534552000461 bayes_pls_golite062009
  • substrate-specific transporter activity
    		•  0.121183207943714 bayes_pls_golite062009
  • structural constituent of cytoskeleton
    		•  0.118975415284669 bayes_pls_golite062009
  • nucleoside-triphosphatase activity
    		•  0.00585398682921312 bayes_pls_golite062009


    Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16


    Philius Transmembrane Prediction:

    Protein predicted to be: GLOBULAR (No transmembrane regions or signal peptide)
    Confidence of classification: 0.99

    Source: Reynolds et al. (2008)

    YRC Informatics Platform - Version 3.0
    Created and Maintained by: Michael Riffle