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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NPCL1_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.81
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAWLGWLL WALLLSAAQG ELYTPKHEAG VCTFYEECGK NPELSGGLTS LSNVSCLSNT  60
   61 PARHVTGEHL ALLQRICPRL YNGPNTTFAC CSTKQLLSLE SSMSITKALL TRCPACSDNF 120
  121 VSLHCHNTCS PDQSLFINVT RVVERGAGEP PAVVAYEAFY QRSFAEKAYE SCSQVRIPAA 180
  181 ASLAVGSMCG VYGSALCNAQ RWLNFQGDTG NGLAPLDITF HLLEPGQALP DGIQPLNGKI 240
  241 APCNESQGDD SAVCSCQDCA ASCPVIPPPE ALRPSFYMGR MPGWLALIII FTAVFVLLSA 300
  301 VLVRLRVVSN RNKNKAEGPQ EAPKLPHKHK LSPHTILGRF FQNWGTRVAS WPLTVLALSF 360
  361 IVVIALAAGL TFIELTTDPV ELWSAPKSQA RKEKSFHDEH FGPFFRTNQI FVTARNRSSY 420
  421 KYDSLLLGSK NFSGILSLDF LLELLELQER LRHLQVWSPE AERNISLQDI CYAPLNPYNT 480
  481 SLSDCCVNSL LQYFQNNRTL LMLTANQTLN GQTSLVDWKD HFLYCANAPL TFKDGTSLAL 540
  541 SCMADYGAPV FPFLAVGGYQ GTDYSEAEAL IITFSLNNYP ADDPRMAQAK LWEEAFLKEM 600
  601 ESFQRNTSDK FQVAFSAERS LEDEINRTTI QDLPVFAVSY IIVFLYISLA LGSYSRCSRV 660
  661 AVESKATLGL GGVIVVLGAV LAAMGFYSYL GVPSSLVIIQ VVPFLVLAVG ADNIFIFVLE 720
  721 YQRLPRMPGE QREAHIGRTL GSVAPSMLLC SLSEAICFFL GALTPMPAVR TFALTSGLAI 780
  781 ILDFLLQMTA FVALLSLDSK RQEASRPDVL CCFSTRKLPP PKEKEGLLLR FFRKIYAPFL 840
  841 LHRFIRPVVM LLFLTLFGAN LYLMCNINVG LDQELALPKD SYLIDYFLFL NRYLEVGPPV 900
  901 YFVTTSGFNF SSEAGMNATC SSAGCKSFSL TQKIQYASEF PDQSYVAIAA SSWVDDFIDW 960
  961 LTPSSSCCRL YIRGPHKDEF CPSTDTSFNC LKNCMNRTLG PVRPTAEQFH KYLPWFLNDP1020
 1021 PNIRCPKGGL AAYRTSVNLS SDGQVIASQF MAYHKPLRNS QDFTEALRAS RLLAANITAD1080
 1081 LRKVPGTDPN FEVFPYTISN VFYQQYLTVL PEGIFTLALC FVPTFVVCYL LLGLDMCSGI1140
 1141 LNLLSIIMIL VDTIGLMAVW GISYNAVSLI NLVTAVGMSV EFVSHITRSF AVSTKPTRLE1200
 1201 RAKDATVFMG SAVFAGVAMT NFPGILILGF AQAQLIQIFF FRLNLLITLL GLLHGLVFLP1260
 1261 VVLSYLGPDV NQALVQEEKL ASEAAVAPEP SCPQYPSPAD ADANVNYGFA PELAHGANAA1320
 1321 RSSLPKSDQK F

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle