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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|38454316, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.79
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGRSSYLIY SFGGLLSLWI LVVSSTNQCT VRYNVADCSH LKLTHIPDDL PSNITVLNLT  60
   61 HNQLRGLPPA NFTRYSQLAL LDAGFNSISK LEPELCQILP LLKVLNLQHN ELSQISDQTF 120
  121 AFCTNLTELH LMSNSIRKIK SNPFKNQKSL IKLDLSHNGL SSTKLGTWVQ LENLQELLLA 180
  181 KNKIFALRNE ELDFLGNSSL QKLDLSSNPL KEFSPGCFHA IGKLFVLLLN NAQLNLDLTE 240
  241 KLCWELSNTS IQNLSLANNQ LLATSNSTFS GLKQTNLTSL DLSYNSLRDV GNDAFSWLPH 300
  301 LKYLSLEYNN IQRLTPHSFR GLSNLRYLSL KRAFTKQSVA LASHPNIDDF SFQWLKCLEH 360
  361 LNMDDNTIPG IKSNTFTGLV SLKYLSLSKT FTGLQTLTNE TFVSLTHSPL LTLNLTKNHI 420
  421 SKIASGTFSW LGQLRILDLG LNEIEQELTG QEWRGLGNIF EIYLSYNKYL QLTSKSFTLV 480
  481 PSLQRLMLRR VALKSVDISP SPFRPLYNLT ILDLSNNNIA NLNEDLLEGL ENLEILDFQH 540
  541 NNLARLWKHA NPGGPVNFLK GLSHLHILNL ESNGLDEIPV KVFKNLFELK SINLGLNNLN 600
  601 TLLPSIFDDQ TSLRSLNLQK NLITSVEKSV FGPAFHNLNS LDMSFNPFDC TCESIAWFVT 660
  661 WLNQTHTNIP ELSTHYLCNT PQRYHGLPVK LFDTSSCKDS APFQLLFIIN TSTLLTFILA 720
  721 VLLIHFEGWR ISFYWNVSVH RILGFKEIDA QGEQFEYTAY IIHAQKDRDW VWEHFSPMEE 780
  781 QDQSLKFCLE ERDFEAGVLG LEAIVNSIKR SRKIIFVITH HLLKDPLCRR FKVHHAVQQA 840
  841 IEQNLDSIIL IFLQNIPDYK LNHALCLRRG MFKSHCILNW PIQKERINAF HHKLQVALGS 900
  901 RNSAH

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle