YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG1732-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	66	0.86
Transmembrane Helix	67	86	0.88
Non-Cytoplasmic	87	95	0.67
Transmembrane Helix	96	130	0.73
Cytoplasmic	131	137	0.41
Transmembrane Helix	138	167	0.76
Non-Cytoplasmic	168	247	0.54
Transmembrane Helix	248	268	0.88
Cytoplasmic	269	276	0.49
Transmembrane Helix	277	299	0.85
Non-Cytoplasmic	300	325	0.53
Transmembrane Helix	326	348	0.83
Cytoplasmic	349	358	0.47
Transmembrane Helix	359	384	0.84
Non-Cytoplasmic	385	417	0.52
Transmembrane Helix	418	439	0.78
Cytoplasmic	440	459	0.86
Transmembrane Helix	460	483	0.92
Non-Cytoplasmic	484	508	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYTNSASDGD GGGDVCKHES IEMSKELGHT TSLQSSSPTT TDTSNKQQLV KIEQLPDRGS  60
   61 WSSKMDFILS VVGLAIGLGN VWRFPYLCYK NGGGAFILPY IITLFLAGIP MFFMELALGQ 120
  121 MLTIGGLGVF KIAPIFKGIG YAAAVMSCWM NVYYIVILAW AVFYFFMSMR ADVPWRTCNN 180
  181 WWNTVNCVSQ YERKNLHCWD KIINGTTQKV CSVSALNITS LELTDPVKEF WERRALQISH 240
  241 GIEEIGNIRW ELAGTLLLVW ILCYFCIWKG VKWTGKVVYF TALFPYVLLT ILLVRGITLP 300
  301 GALEGIKFYI IPNFSKLTNS EVWIDAVTQI FFSYGLGLGT LVALGSYNKF TNNVYKDALI 360
  361 VCTVNSSTSM FAGFVIFSVI GFMAHEQQRP VADVAASGPG LAFLVYPSAV LQLPGSPMWS 420
  421 CLFFFMLLLI GLDSQFCTME GFITAIIDEW PQLLRKRKEI FIAIVCALSY LVGLTCITQL 480
  481 AAFAYCGSYS LNVFQYLGAM EWIDFMTE