YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Trc8-PD
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	123	0.68
Transmembrane Helix	124	145	0.84
Non-Cytoplasmic	146	150	0.44
Transmembrane Helix	151	174	0.73
Cytoplasmic	175	192	0.44
Transmembrane Helix	193	222	0.67
Non-Cytoplasmic	223	237	0.37
Transmembrane Helix	238	272	0.67
Cytoplasmic	273	352	0.60
Transmembrane Helix	353	376	0.77
Non-Cytoplasmic	377	391	0.49
Transmembrane Helix	392	413	0.69
Cytoplasmic	414	458	0.48
Transmembrane Helix	459	480	0.93
Non-Cytoplasmic	481	488	0.84
Transmembrane Helix	489	514	0.86
Cytoplasmic	515	534	0.85
Transmembrane Helix	535	557	0.88
Non-Cytoplasmic	558	565	0.82
Transmembrane Helix	566	586	0.78
Cytoplasmic	587	809	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVRTKVLGL VDVMMRVPPV MVIDEILKMD MGMQSWLYPD KDKASGALAT PTEAPAVPSG  60
   61 QDPFTSIKEL FSHMTTSAQS VLEQSIEKAS EAAKTHGMLS SGFNSLMNEL SKDQTLADVL 120
  121 STTTVKFVLC VFAFLSAACI FMLWTRHLVM VYMFLTSLGL TFLSYWSNVS ALALTERSPS 180
  181 MVEDLMSLNT TRLLDSGGVV MSLAPHLMAQ WFMGMLFAYI HLGPRFEHVQ RSMPIIFASP 240
  241 ILLAMLPLPA KVVQHLPVVA VFTPIILTKI TLMQSAMEAS RTVYNGYQYA MNFVSNFGLS 300
  301 ALIENEWQRL NVPNVLRVFW TIRLIQGGYA LATTESDEPL DLMTATQKLL VDGCETMTAV 360
  361 LGMTGVISMF CHYIGRGFQW YLLTYDDEEK SLGTVSAVLF YILALQTGLT SLSPDKRFIR 420
  421 LCRNLCLLMT ALLHFLHNIV SPILMSLSAA RNPSRKRHVR ALSVCAFLVV LSVSLLYHLW 480
  481 SQQSISTWLL AVTAFSVEVV VKVLVSLATY TLFLLDARRQ FFWEKLDDYL YYVRAFGNSV 540
  541 EFCFGILLFI NGAWILIFES AQNATGGGIR AIMMCIHAYF NIWCEARAGW SVFMKRRSAV 600
  601 HKISALPEAT PAQLQAFDDV CAICYQEMYS AKITRCRHFF HGVCLRKWLY VQDRCPLCHE 660
  661 IMMYTDKADE NAPEAEPAPA AQAEQPMRIY PRDDANNAAA QRRSPERAPV EASEQAPATS 720
  721 SSSAAATIGA EAVSAIVESA AAVGEARSLV SVASSSSATH RISASGSSDS SYMTASAQSP 780
  781 PPTATSAAAV ATAAASNTTH MFRMSQDQQ