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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Vha100-1-PH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTCHGHTRFI VRKFVGCWSL WTNLYLIFKH LLNPDVNAFQ RKFVNEVRRC DEMERKLRYL  60
   61 EKEIKKDGIP MLDTGESPEA PQPREMIDLE ATFEKLENEL REVNQNAEAL KRNFLELTEL 120
  121 KHILRKTQVF FDEMADNQNE DEQAQLLGEE GVRASQPGQN LKLGFVAGVI LRERLPAFER 180
  181 MLWRACRGNV FLRQAMIETP LEDPTNGDQV HKSVFIIFFQ GDQLKTRVKK ICEGFRATLY 240
  241 PCPEAPADRR EMAMGVMTRI EDLNTVLGQT QDHRHRVLVA AAKNLKNWFV KVRKIKAIYH 300
  301 TLNLFNLDVT QKCLIAECWV PLLDIETIQL ALRRGTERSG SSVPPILNRM QTFENPPTYN 360
  361 RTNKFTKAFQ ALIDAYGVAS YREMNPAPYT IITFPFLFAV MFGDLGHGAI MALFGLWMIR 420
  421 KEKGLAAQKT DNEIWNIFFG GRYIIFLMGV FSMYTGLIYN DIFSKSLNIF GSHWHLSYNK 480
  481 STVMENKFLQ LSPKGDYEGA PYPFGMDPIW QVAGANKIIF HNAYKMKISI IFGVIHMIFG 540
  541 VVMSWHNHTY FRNRISLLYE FIPQLVFLLL LFFYMVLLMF IKWIKFAATN DKPYSEACAP 600
  601 SILITFIDMV LFNTPKPPPE NCETYMFMGQ HFIQVLFVLV AVGCIPVMLL AKPLLIMQAR 660
  661 KQANVQPIAG ATSDAEAGGV SNSGSHGGGG GHEEEEELSE IFIHQSIHTI EYVLGSVSHT 720
  721 ASYLRLWALS LAHAQLAEVL WTMVLSIGLK QEGPVGGIVL TCVFAFWAIL TVGILVLMEG 780
  781 LSAFLHTLRL HWVEFQSKFY KGQGYAFQPF SFDAIIENGA AAAEE

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle