YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CG13978-PA
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.50
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.48
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	425	0.97
Transmembrane Helix	426	446	0.82
Cytoplasmic	447	457	0.82
Transmembrane Helix	458	478	0.93
Non-Cytoplasmic	479	485	0.68
Transmembrane Helix	486	503	0.68
Cytoplasmic	504	509	0.58
Transmembrane Helix	510	530	0.76
Non-Cytoplasmic	531	533	0.38
Transmembrane Helix	534	551	0.61
Cytoplasmic	552	561	0.64
Transmembrane Helix	562	578	0.97
Non-Cytoplasmic	579	593	0.65
Transmembrane Helix	594	611	0.86
Cytoplasmic	612	618	0.85
Transmembrane Helix	619	639	0.85
Non-Cytoplasmic	640	645	0.85
Transmembrane Helix	646	666	0.94
Cytoplasmic	667	677	0.90
Transmembrane Helix	678	703	0.76
Non-Cytoplasmic	704	743	0.86
Transmembrane Helix	744	765	0.89
Cytoplasmic	766	780	0.74
Transmembrane Helix	781	805	0.85
Non-Cytoplasmic	806	813	0.72
Transmembrane Helix	814	833	0.96
Cytoplasmic	834	849	0.82
Transmembrane Helix	850	872	0.89
Non-Cytoplasmic	873	898	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWKLQALVVH ILLMGAILNT YFQHTLLPNL VPQKTMRELG LEPPADRLVV FVTDGLRAAT  60
   61 FLANNGSDVP DLKDIYRQQG RIGISRTCAP TMTRPGHIAI FAGFHEDPAA SLMHLCYNPG 120
  121 DFDTVFNRSR NMIGWAHSYI VGYFVKLSHG GAPLRFDSYM ERDLPEKLTC DKWAFDKVEN 180
  181 FLRNVDNVRE WRNYKPAVFF VYLADMDIAA HRFKPLSKKF FAKLQYTQRG IRNTYELFER 240
  241 VFNDSRTAYL MTSDHGMNNE GAHGSGSPLE VETPLFMWGA GVKRDEIDAE ANFPEKPNIS 300
  301 QVDQTQLAPL MSSLIGLPPP KNNLALMPVG YLNVSDEYQA VALHLNVLQL LSQAEILIGR 360
  361 HEKAIFYKWL PKFKELHIGV IDQYAAQFDI LKSEGNLTDA MEFCKEYGKL AKKCLTYYNQ 420
  421 YYQTPLIVAN SMSYMIWFYC LLLQLTRLSK KEKMQRRGFM TVSTLILAMI GILLIAMMEL 480
  481 QKVPHIAAFY LILPVGMLIM AQAERPVRGY WIFHPLWNFG FILVPAVLIM SMTFIIRHLW 540
  541 VLYGISVLLN NRRALRKPSI KLFIWLSLAL IVTAILFMEQ RTIKGLKTIP VKDYHVLYVS 600
  601 MVLAIIRPLI LGHRHDPRVW TFNSLTLVVG AFGVYQYKFY ESVSSYVYVV TWSFLFFAFL 660
  661 SIVYFAKSLP EARKRLELIT INMITVLSLL TNSWGCLNFQ IAITEFIFGL QIYEETKETK 720
  721 EIEDAKDEHT SLQNLKGFYR YGYMILLYFY VSFFLAGHWI SSFLFKPTTA RLFYPHFSLY 780
  781 IAGSLVLLKI FIPSVIFICA LYAMVPFVRK NARSILISIF MISNAMGLYQ YYFIRNRGSW 840
  841 RKIRMFLDQI LLTHAVNFML LLGISLAKIF LANTTMERPG QKRARTTRSN LAAAETEP