YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	wfs1-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	252	0.73
Transmembrane Helix	253	287	0.56
Non-Cytoplasmic	288	305	0.56
Transmembrane Helix	306	324	0.86
Cytoplasmic	325	364	0.94
Transmembrane Helix	365	383	0.96
Non-Cytoplasmic	384	391	0.71
Transmembrane Helix	392	411	0.88
Cytoplasmic	412	456	0.69
Transmembrane Helix	457	485	0.60
Non-Cytoplasmic	486	491	0.54
Transmembrane Helix	492	512	0.81
Cytoplasmic	513	525	0.52
Transmembrane Helix	526	551	0.85
Non-Cytoplasmic	552	563	0.61
Transmembrane Helix	564	583	0.96
Cytoplasmic	584	590	0.62
Transmembrane Helix	591	612	0.91
Non-Cytoplasmic	613	872	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATWTQNEPT GVTKRRRWNL EDRASLNKLK HHIAEEGCPQ MQYDLAKELL DNSIGECKDL  60
   61 LENYKIMKIA MSAVEPNLAK GNQSQKAVNW LVSAAHNGHE DAVKLLRQCY NDGSGITAEN 120
  121 TDEVRRCLAM TPGERAARKA ARELFACLSN GNEHITPKQL ERKMRRIYNL QRKRRRRDDD 180
  181 RSSSSSEGEQ EPECEPLEDV PTIDLANVER RRLITEAHLV SAASNYSAGQ MPSVNDALTL 240
  241 SVPDPRSLDH VPCFYRMIFH PLIFFTLFYH RLLNLIVSIP NVIPLSVRCS VLVAISWWSS 300
  301 RHMLPLVSYY LSLGIMIWAT CKMLKTKQQF VDFRIWSGLF LSYGDQNIEA DIAEHRFLRN 360
  361 NMKPYLYFFC AFICNLIVYP LVTDAWLPHS ELTIISGALT FITMCVSMYA SSHQLPDWLV 420
  421 IVSFAVNVLA KYPYEMDEVV STRWRFLDLR VPTFSSFVIG NGIEFCLNCR TALYLFIPVL 480
  481 LIMMAKRSRW HGVYTFLIPH CVTLSWLQVC IATSQSSTVF GVMRAALGLA GIVLFLPLFG 540
  541 IVALLVPVFV AIDSLGLASE QLRWGSTALA CGLVVVLSCI LALNRATQKY ITMLQLITAI 600
  601 TTACLLVLPY MTSSFKDTPR FNAMPRAGLH SLSETNTLPW DRFHALCAQP VHEQPNKIKA 660
  661 QLRCSLLNGM PVIWEGSVTK VEISRVSNFL EDTIANYLPV WLGRMLRCLH GENISQHFKC 720
  721 DPKLDAQCEE WRSVFKTFNA QSGSCTLQRW NRYEYELLVK VGTKRSGRLL GRSTTTDVIL 780
  781 RAHHDFGNFT RLLSEGDVVL FYGILHNSRL LADNVQVKLK TIECVECRSR DLGTASIERV 840
  841 VAASPMDARL QDLMRGIKYL LNALLNPLIT FK