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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: srp-PA
Protein type: Globular with Signal Peptide
Type Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKTTKPKEK AAAGGAVIGS GSGLGSVTKA GGGSLLSNAA DSKIRTAKSN NNKRQAGRAA  60
   61 TALAATTTAS ALAATTTAGA TGSNAAANET EIAIETENGE AATPTAAATA AAANLSSLES 120
  121 ARSQALTSVV SETARQAVTT ANASATSTST VTAATEIATA TASDTAATSE AAIDDDPSAI 180
  181 NTNNNNNNSK AQNDASESVK TKVISYHQSE DQQQQQQQQA QIYEQQQQFL SQQLISHHQQ 240
  241 EQHQQAQQQQ HQQVVQEQHQ ASWLAYDLTS GSAAAAAAAA AAASHPHLFG QFSYPPSHHT 300
  301 PTQLYEHYPS TDPIMRNNFA FYSVYTGGGG GVGVGMTSHE HLAAAAAAAA AVAQGTTPNI 360
  361 DEVIQDTLKD ECFEDGHSTD YHVLTSVSDM HTLKDSSPYA LTHEQLHQQQ HHHQQQLHHH 420
  421 QQQQQQLYHQ QQQQQQQQQH HHHHNNSTSS AGGDSPSSSH ALSTLQSFTQ LTSATQRDSL 480
  481 SPENDAYFAA AQLGSSLQNS SVYAGSLLTQ TANGIQYGMQ SPNQTQAHLQ QQHHQQQQQQ 540
  541 HQQHQQQQLQ QQQQQHHHNQ HQHHNSSSSS PGPAGLHHSS SSAATAAAVA AATAAVNGHN 600
  601 SSLEDGYGSP RSSHSGGGGG GTLPAFQRIA YPNSGSVERY APITNYRGQN DTWFDPLSYA 660
  661 TSSSGQAQLG VGVGAGVVSN VIRNGRAISA ANAAAAAAAD GTTGRVDPGT FLSASASLSA 720
  721 MAAESGGDFY KPNSFNVGGG GRSKANTSGA ASSYSCPGSN ATSAATSAVA SGTAATAATT 780
  781 LDEHVSRANS RRLSASKRAG LSCSNCHTTH TSLWRRNPAG EPVCNACGLY YKLHSVPRPL 840
  841 TMKKDTIQKR KRKPKGTKSE KSKSKSKNAL NAIMESGSLV TNCHNVGVVL DSSQMDVNDD 900
  901 MKPQLDLKPY NSYSSQPQQQ LPQYQQQQQL LMADQHSSAA SSPHSMGSTS LSPSAMSHQH 960
  961 QTHPHQQQQQ QLCSGLDMSP NSNYQMSPLN MQQHQQQQSC SMQHSPSTPT SIFNTPSPTH1020
 1021 QLHNNNNNNN NSSIFNNNNN NNSSSNENNN KLIQKYLQAQ QLSSSSNSGS TSDHQLLAQL1080
 1081 LPNSITAAAA AAAAAAAAAI KTEALSLTSQ ANCSTASAGL MVTSTPTTAS STLSSLSHSN1140
 1141 IISLQNPYHQ AGMTLCKPTR PSPPYYLTPE EDEQPALIKM EEMDQSQQQQ QQQQHQQQQH1200
 1201 GEIMLSRSAS LDEHYELAAF QRHQQQQQQL QQQTAALLGQ HEQHVTNYAM HKFGVDRETV1260
 1261 VKME

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle