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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: NRCAM_RAT
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLKTMPKKK PLSAGRAPLF LFLCQMISAL DVPLDPKLLD DLVQPPTITQ QSPKDYIIDP  60
   61 RENIVIQCEA KGKPPPSFSW TRNGTHFDID KDPLVTMKPG SGTLVINIMS EGKAETYEGV 120
  121 YQCTARNERG AAVSNNIVVR PSRSPLWTKE RLEPIILRSG QSLVLPCRPP IGLPPAIIFW 180
  181 MDNSFQRLPQ SERVSQGLNG DLYFSNVLPE DTREDYICYA RFNHTQTIQQ KQPISLKVIS 240
  241 VDELNDTIAA NLSDTEFYGA KSSKERPPTF LTPEGNESHK EELRGNVLSL ECIAEGLPTP 300
  301 VIYWIKEDGT LPVNRTFYRN FKKTLQIIHV SEADSGNYQC IAKNALGAVH HTISVTVKAA 360
  361 PYWIVAPHNL VLSPGENGTL ICRANGNPKP RISWLTNGVP VEIALDDPSR KIDGDTIMFS 420
  421 NVQESSSAVY QCNASNKYGY LLANAFVNVL AEPPRILTSA NTLYQVIANR PALLDCAFFG 480
  481 SPMPTIEWFK GTKGSALHED IYVLHDNGTL EIPVAQKDST GTYTCVARNK LGMAKNEVHL 540
  541 EIKDPTRFIK QPGYAVVQRG SKVSFECKVK HDHTLIPTIL WLKDNGELPN DERFSVDKDH 600
  601 LVVSDVKDED GGTYTCAANT TLDSVSASAV LRVVAPTPTP APIYDVPNPP FDLELTNQLD 660
  661 KSVQLTWTPG DDNNSPITKF IIEYEDAMHE AGLWRHQAEV SGTQTTAQLK LSPYVNYSFR 720
  721 VMAENSIGRS VPSEASEQYL TKAAEPDQNP TAVEGLGTEP DNLVITWKPL NGFQSNGPGL 780
  781 QYKVSWRQKD GDDEWTSVVV ANVSKYIVSG TPTFVPYLIK VQALNDVGFA PEPAAVMGHS 840
  841 GEDLPMVAPG NVRVSVVNST LAEAHWDPVP PKSVRGHLQG YRIYYWKAQS SSKRNRRHIE 900
  901 KKILTFQGSK THGMLPGLQP YSHYVLNVRV VNGKGEGPAS ADRGFHTPEG VPSAPSSLKI 960
  961 VNPTLDSLTL EWDPPSHPNG ILTEYILKYQ PINSTHELGP LVDLKIPANK TRWTLKNLNF1020
 1021 STRYKFYFYA QTSVGSGSQI TEEAITTVDE GKKAGILPPD VGAGKAMASR QVDIATQGWF1080
 1081 IGLMCAVALL ILILLIVCFI RRNKGGKYPV KEKEDAHADP EIQPMKEDDG TFGEYSDAED1140
 1141 HKPLKKGSRT PSDRTVKKED SDDSLVDYGE GVNGQFNEDG SFIGQYSGKK EKEPAEGNES1200
 1201 SEAPSPVNAM NSFV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle