YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	LOLB_COXBU
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLISNNEER SLRVRYCIAI ALSALLISGC TTLRLPNQST SVYHQQTWAQ RYYDLSRISQ  60
   61 WNIDGAFSIQ QPGKTIIAAY DWQQKGMNYR IRIHSSLDIY SVNISGRPGM VTLWRSPRQH 120
  121 YTASTPEQLM QQQLGWQLPL SNLYYWIRGI PAPGAYQADF DTYTHLIALQ QSGWHIRFSQ 180
  181 YTTVGSVDLP RTLQLSNGSL AVKIVVKHWQ

Type	Start	End	Confidence
Cytoplasmic	1	11	0.72
Transmembrane Helix	12	33	0.65
Non-Cytoplasmic	34	210	0.98