YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	COBT_SHEON
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQSSLSFQI EPVSKAQDQV IQQKIDLKTK PPGALGMLES LALQIARIQG PQQLQIVKPT  60
   61 MLVFAGDHGI AAEGVSIAPS EVTHQMVQNF AEGGAAINVF CRQLGLTLEV IDCGILTPVE 120
  121 GVEGIIDQRL GAGTGAIHLE PAMSLDCVDK GFAMARELIE RHHQAGCNLV AFGEMGIGNT 180
  181 SSAAAIMAAI MQLEVADCVG RGTGINSETL ARKLTLVELA LLSHQSAMTG PKQVLACLGG 240
  241 FEIVQMTGAM LAAAERKMLV VVDGFIATAA ALVAVTINAN VRDYLIFAHR SEEQGHQRML 300
  301 EHLQAKPLLS LGLRLGEGTG AALALPLIQA AANFYNQMAS FSDAGIEAVV

Type	Start	End	Confidence
Cytoplasmic	1	233	0.64
Transmembrane Helix	234	253	0.47
Non-Cytoplasmic	254	258	0.60
Transmembrane Helix	259	281	0.65
Cytoplasmic	282	310	0.46
Transmembrane Helix	311	332	0.42
Non-Cytoplasmic	333	350	0.64