YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lgc-7
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFYDFKFVF YLAISWCNLL EVDGITVAEQ LKDVLMEGYD SSIRPVNNER DILIINISMN  60
   61 TMSVLTLDPA EETINFSSEF ILQWKDEFLF WNKSDYNITW LKLKESFLWT PDTTVSTSID 120
  121 TNYLIDASER YVSVKHDGTV RQSIYAVFTN LCDMNVDKFP YDQQTCMIKM GPWSYTTQEV 180
  181 TCIVGRDIAP NDTDFGDFHG NSEWDFEGIV SSVGETEDPD VNFTFSEVHF ALTVKRRPQF 240
  241 YVWVLLIPTY IITVVCIFGL FTPTANHGLR EERVNLGITT LLSSAVILQI VANAMPKTSE 300
  301 LPLLGNFILA EIFVVAIGVL FAVLVLTLHQ RAHTREWRPP AWMLWILRMT GSSKFLSRNI 360
  361 TKIRHKSSTA ERIHYTGEGA YLFKNLDESL QSVREYIQEE DRDYFRELTY VKFFDRLDFL 420
  421 LLFIFQVGNA LVTLFLVKQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	239	0.78
Transmembrane Helix	240	262	0.93
Cytoplasmic	263	273	0.69
Transmembrane Helix	274	295	0.85
Non-Cytoplasmic	296	306	0.74
Transmembrane Helix	307	328	0.94
Cytoplasmic	329	416	0.87
Transmembrane Helix	417	437	0.76
Non-Cytoplasmic	438	439	0.72