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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: syg-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.94
Topology Confidence: 0.90
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRWQTWPLL LLFQLVTCQQ LQQRIVEAPK DTLAAVGETA ILTCRVEHQQ GPVQWMKDDF  60
   61 GLGTDRDKPL PGNKRYRMVG SAANGEYNLE ISNVTLFDDD DFACQISESD HAKAVVSSKA 120
  121 KLTVLVRPTP PKIVKSHHSL KAIAGDPITQ SCLSRKGKPP PTIGWAIASD EHGKHIVSWL 180
  181 GESRSKFGGI HAKPEISQET VIAHVNETTQ VEEGGNNSRE DSSIYSIMSN LSFIPRPEDD 240
  241 HKYLICISQH MTFPNKIEVD SVKLSLRYAP QINLTVASKL PLRENGSALL ACNVNAKPLD 300
  301 NVKISWYKGN QKLRETGDTL TFETLKMEDH NRDIFCEATN EIGTTRGSIK LNVAFGARIM 360
  361 STSQDKEVNE GDNAFFHCAT LANPAPAIFW TRGDSDEIIG HGENLTLENV RTWQQGNYNC 420
  421 TATVEGFRKQ ILSHYLHIRG PPTVSMKDEV SASLDEATEI ICEISGRPKT NNVRWTVNGK 480
  481 EINFNNGRIT VHQYPKPYGK ESILKIKDLK EEDFGVYNCS ANNGLGFDNR GTLLKKRNIL 540
  541 DWIVITAKFD RMVALAIISA GVLLVSLLCC LCMCRSNCRS RKSKFIDDQS DVTVKCEALD 600
  601 GQYFPEMYSS SPVDNVHLST KDYISIPQNN PDLDFLGATG SFGPPGGLYP KCFNNSANEY 660
  661 IYNRYVRRGD ERQIAGYGDA TGSGDSQNVQ LQLPLVAGSG PTN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle