YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SAL1
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLKNCETDK QRDIRYACLF KELDVKGNGQ VTLDNLISAF EKNDHPLKGN DEAIKMLFTA  60
   61 MDVNKDSVVD LSDFKKYASN AESQIWNGFQ RIDLDHDGKI GINEINRYLS DLDNQSICNN 120
  121 ELNHELSNEK MNKFSRFFEW AFPKRKANIA LRGQASHKKN TDNDRSKKTT DSDLYVTYDQ 180
  181 WRDFLLLVPR KQGSRLHTAY SYFYLFNEDV DLSSEGDVTL INDFIRGFGF FIAGGISGVI 240
  241 SRTCTAPFDR LKVFLIARTD LSSILLNSKT DLLAKNPNAD INKISSPLAK AVKSLYRQGG 300
  301 IKAFYVGNGL NVIKVFPESS IKFGSFEVTK KIMTKLEGCR DTKDLSKFST YIAGGLAGMA 360
  361 AQFSVYPIDT LKFRVQCAPL DTKLKGNNLL FQTAKDMFRE GGLRLFYRGV TVGIVGIFPY 420
  421 AALDLGTFSA LKKWYIAKQA KTLNLPQDQV TLSNLVVLPM GAFSGTVGAS VVYPINLLRT 480
  481 RLQAQGTYAH PYVYNGFKDV LLKTLEREGY QGLFKGLVPT LAKVCPAVSI SYLCYENLKK 540
  541 FMNLE

Type	Start	End	Confidence
Non-Cytoplasmic	1	226	0.69
Transmembrane Helix	227	245	0.42
Cytoplasmic	246	404	0.73
Transmembrane Helix	405	423	0.85
Non-Cytoplasmic	424	454	0.82
Transmembrane Helix	455	477	0.83
Cytoplasmic	478	545	0.85