YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SEC62
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAVGPGSNA GASVNGGSAT AIATLLRNHK ELKQRQGLFQ AKQTDFFRYK RFVRALHSEE  60
   61 YANKSARQPE IYPTIPSNKI EDQLKSREIF IQLIKAQMVI PVKKLHSQEC KEHGLKPSKD 120
  121 FPHLIVSNKA QLEADEYFVW NYNPRTYMDY LIVIGVVSII LALVCYPLWP RSMRRGSYYV 180
  181 SLGAFGILAG FFAVAILRLI LYVLSLIVYK DVGGFWIFPN LFEDCGVLES FKPLYGFGEK 240
  241 DTYSYKKKLK RMKKKQAKRE SNKKKAINEK AEQN

Type	Start	End	Confidence
Cytoplasmic	1	146	0.68
Transmembrane Helix	147	170	0.88
Non-Cytoplasmic	171	177	0.66
Transmembrane Helix	178	202	0.84
Cytoplasmic	203	274	0.70