YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ORP3A_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNDPKNGG GFFASLASSI TNFGSAMSKS VNGLMGYEGL EVINPEGSTD DAEEEAGRGR  60
   61 WKQEERDGYW KMMQKYIGSD VTSMVTLPVI IFEPMTMLQK MAELMEYSYL LDMADKTEDP 120
  121 YMRMVYASSW AISVYYAYQR TWKPFNPILG ETYEMTNHNG INFIAEQVCH HPPMSAGHAE 180
  181 NEHFAYDCTS KLKTKFLGNS IDVYPVGRTR VTLKRDGVVL DLVPPLTKVH NLIFGRTWVD 240
  241 SPGEMVMTNL TTGDKVVLYF QPCGWFGSGR YEVDGYVYNS AEEPKMLMTG KWNESLSYQP 300
  301 CDAEGEPLPG TELKEVWKVA EAPKNDKYQY THFAHKINSF DTAPKKLLSS DSRLRPDRYA 360
  361 LEMGDMSKSG FEKSSLEDRQ RAEKKSREEK GQKFAPKWFD ETEEVTPTPW GDLEVYQFNG 420
  421 KYSVHRATAE NSEDTTDVKL TQFNPWQFQD LSA

Type	Start	End	Confidence
Signal Peptide	1	26	0.55
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	453	0.97