YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|30693041, gi|...
Protein type: Transmembrane
Type Confidence: 0.65
Topology Confidence: 0.52
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEGTKQERT LENNLLHKVG EAVSAISDAK HVDQVISAIH SVAVLLFPVD PSLFSGNFEM  60
   61 LHIVRGSGTF GLLMILYLGS AQVCSSVVPS ADERNEWLET FYRGVAFPTF ARVLLLDVAS 120
  121 DWLSCFPISV QKHLYDKFFL DGSVIEVVQV LVPFLHHVGD GGVNANSVQT NVERLLILCL 180
  181 LENDGVLKIT KEIGNIYQGH NSSNGSLKPL LSRLSQILTS IPDKARASCT EANCTVIVLS 240
  241 FVGEVFSRIC RRGLSDLLLS EVTPHVLAQV RRLLNSKIGA IEVDTFQLDP TTRIWSKTME 300
  301 AVTDPYAVEK MAEQLLHQLY AEHPSDVEAF WTIWTLFHRN VIHQASVRQA KCFLWQLDSF 360
  361 FRYPFFFFHF HPNAVKQCVL ECPPVTNTLA KGDVTQGLLE TTQRLASVWS KREFLQSVQL 420
  421 EQQAYLQFLF PVTDISDITA ALGLCLENMS REELDRTKDV MHSILQGVSC RLENPGDLVR 480
  481 KMASSIAFMF SKVIDPKNPL YLDDSITDNA IDWEFGLQTA SITNTMENGD GENKRSASLT 540
  541 EVNESSRRNK QKENRKSKNI SAFVLADPNE IVDLATLNCD TESDKDDGDD DASVSSDNSS 600
  601 VTSLEPYDLM DDDKDLGKQF THLVDVVGAL RKTDDADGVE KAIYVAEKLV RASPDELTHI 660
  661 AGDLARTLVQ VRCSDIAIEG EEDSAEEKRQ RALIALLVTR PFESLETLNN ILYSPNVDVS 720
  721 QRIMILDVMA EAARELANSK TLKPKHEARG PLISNISDPQ PWYLPSNAST PWKKVSETGS 780
  781 FHLNWANRFE RELQSKPGQT KKGKSRRWSL KSADRDQNST DWSQNRFPLY AAAFMLPAMK 840
  841 EFDKKRHGVD LLGRDFVVLG KLVHMLGVCM QCASMHPEAS ALAISLLDML QRREVCNHPE 900
  901 AYVRRAVLFA ASSVLVSLHP SYIVSTLVEG NLDLSRALEW IRTWALQIAD SDIDRDCYTM 960
  961 ALSCLQLHAE MALQTSRALE STGGSSSSSS IRPMNISLPS GISKLTSIKL PSSNVHL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle