YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|6682229, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.61
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPATFQFS RTKLNLQINL VERKSPSKLS FPLLFRDQAK STPIRFPVIR ASSSSSASNH  60
   61 KPSLLKTTFI SLTAAAALFS ASFYFVNKRA AMTPVAVVET TLEKHLETQS NDVNALSLLT 120
  121 EIKFKSDKHE QAIVFLDRLI EIEPYERKWP AMKARILSYH GKSESAIEAF EEILEKDPIR 180
  181 VDAYHYLVME YYNSKPKLTE IEKRINKVIR RCKKEKKTKE ILGFRMLIAQ IRFIEGKSVE 240
  241 AIRICEELVK EDPNDFTIYL FQGVVYTLMN KGEEAAKQFE HVARVIPRNH PSRETAARTT 300
  301 NSNEWRVIVA YDNVYCYLST FARLSMASLF NKFG

Type	Start	End	Confidence
Cytoplasmic	1	63	0.50
Transmembrane Helix	64	85	0.55
Non-Cytoplasmic	86	334	0.89