YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SAG12_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALKHMQIFL FVAIFSSFCF SITLSRPLDN ELIMQKRHIE WMTKHGRVYA DVKEENNRYV  60
   61 VFKNNVERIE HLNSIPAGRT FKLAVNQFAD LTNDEFRSMY TGFKGVSALS SQSQTKMSPF 120
  121 RYQNVSSGAL PVSVDWRKKG AVTPIKNQGS CGCCWAFSAV AAIEGATQIK KGKLISLSEQ 180
  181 QLVDCDTNDF GCEGGLMDTA FEHIKATGGL TTESNYPYKG EDATCNSKKT NPKATSITGY 240
  241 EDVPVNDEQA LMKAVAHQPV SVGIEGGGFD FQFYSSGVFT GECTTYLDHA VTAIGYGEST 300
  301 NGSKYWIIKN SWGTKWGESG YMRIQKDVKD KQGLCGLAMK ASYPTI

Type	Start	End	Confidence
Signal Peptide	1	25	0.77
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	346	0.98