YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MDAR4_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.91
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRAFVYVIL GGGVAAGYAA LEFTRRGVSD GELCIISEEP VAPYERPALS KGFLLPEAPA  60
   61 RLPSFHTCVG ANDEKLTPKW YKDHGIELVL GTRVKSVDVR RKTLLSSTGE TISYKFLIIA 120
  121 TGARALKLEE FGVEGSDAEN VCYLRDLADA NRLATVIQSS SNGNAVVIGG GYIGMECAAS 180
  181 LVINKINVTM VFPEAHCMAR LFTPKIASLY EDYYRAKGVK FIKGTVLTSF EFDSNKKVTA 240
  241 VNLKDGSHLP ADLVVVGIGI RPNTSLFEGQ LTIEKGGIKV NSRMQSSDSS VYAIGDVATF 300
  301 PVKLFGEMRR LEHVDSARKS ARHAVSAIMD PIKTGDFDYL PFFYSRVFAF SWQFYGDPTG 360
  361 DVVHFGEYED GKSFGAYWVK KGHLVGSFLE GGTKEEYETI SKATQLKPAV TIDLEELERE 420
  421 GLGFAHTVVS QQKVPEVKDI PSAEMVKQSA SVVMIKKPLY VWHAATGVVV AASVAAFAFW 480
  481 YGRRRRRW

Type	Start	End	Confidence
Signal Peptide	1	19	0.87
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	458	0.99
Transmembrane Helix	459	481	0.95
Cytoplasmic	482	488	0.91