YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|8388621, gi\|7...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLISGILFG IIFGVALMAG WSRMMTHRSS KRVAKAVDMK LLGSLSRDDL KKICGDNFPQ  60
   61 WISFPAFEQV KWLNKLLSKM WPYIAEAATM VIRDSVEPLL EDYRPPGITS LKFSKLTLGN 120
  121 VAPKIEGIRV QSFKEGQVTM DVDLRWGGDP NIVLGVTALV ASIPIQLKDL QVFTVARVIF 180
  181 QLADEIPCIS AVVVALLAEP KPRIDYTLKA VGGSLTAIPG LSDMIDDTVD TIVKDMLQWP 240
  241 HRIVVPIGGI PVDLSDLELK PQGKLIVTVV KATNLKNKEL IGKSDPYATI YIRPVFKYKT 300
  301 KAIENNLNPV WDQTFELIAE DKETQSLTVE VFDKDVGQDE RLGLVKLPLS SLEAGVTKEL 360
  361 ELNLLSSLDT LKVKDKKDRG SITLKVHYHE FNKEEQMAAL EDEKKIMEER KRLKEAGVIG 420
  421 STMDAVGMVG SGLGAGVGMV GTGIGTGVGL VGSGVSSGVG MVGSGFGAVG SGLSKAGRFM 480
  481 GRTITGQSSK RSGSSTPVNT VPENDGAKQQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.88
Transmembrane Helix	6	25	0.94
Cytoplasmic	26	416	0.99
Transmembrane Helix	417	440	0.85
Non-Cytoplasmic	441	449	0.65
Transmembrane Helix	450	473	0.86
Cytoplasmic	474	510	0.96