YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28059343, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQTHLLVGPI PLKGYRRFSS SSFSGDLLPP SSNPIGRDLF PHRRRHRDGK SRSYRNRSKT  60
   61 TITSAAFSSS SNTGGQNHYA VLGIARNATQ GDIKRAYRLL ARKFHPDVNK DSKAGELFKS 120
  121 VRCSYEVLSN EATRTQYDRA LKLQENSRFH RVKRHSYTPE VEDAMKYYYT WSEKRQRSRH 180
  181 GRFYGHYSTY PNSHFYAETE PQEEEGVETA PDQRDSFVEA LKSAFLSMFL LYTFGCLASL 240
  241 TFSTFTALLD KELDMGYKVG FMIAWILGGK GGILLTLCLT FASWLCGKAS SSVVVLVLVA 300
  301 MWVGSNLARH APLPQGALLT LLYMSIKLQV DST

Type	Start	End	Confidence
Cytoplasmic	1	223	0.81
Transmembrane Helix	224	249	0.83
Non-Cytoplasmic	250	260	0.72
Transmembrane Helix	261	285	0.84
Cytoplasmic	286	291	0.54
Transmembrane Helix	292	313	0.77
Non-Cytoplasmic	314	333	0.67