YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RMA1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALDQSFEDA ALLGELYGEG AFCFKSKKPE PITVSVPSDD TDDSNFDCNI CLDSVQEPVV  60
   61 TLCGHLFCWP CIHKWLDVQS FSTSDEYQRH RQCPVCKSKV SHSTLVPLYG RGRCTTQEEG 120
  121 KNSVPKRPVG PVYRLEMPNS PYASTDLRLS QRVHFNSPQE GYYPVSGVMS SNSLSYSAVL 180
  181 DPVMVMVGEM VATRLFGTRV MDRFAYPDTY NLAGTSGPRM RRRIMQADKS LGRIFFFFMC 240
  241 CVVLCLLLF

Type	Start	End	Confidence
Cytoplasmic	1	229	0.79
Transmembrane Helix	230	248	0.96
Non-Cytoplasmic	249	249	0.98