YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RK1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAACATHSSL MLAYAAASTR SQDLTPTPSL FSFASSRPNH LSFPLLLLGG SRDRRCAAID  60
   61 RASNHKFIVS AVAAEADLDT EEDLEQTATA VLDPPKPKKG KAALVLKRDR TRSKRFLEIQ 120
  121 KLRETKKEYD VNTAISLLKQ TANTRFVESV EAHFRLNIDP KYNDQQLRAT VSLPKGTGQT 180
  181 VIVAVLAQGE KVDEAKSAGA DIVGSDDLIE QIKGGFMEFD KLIASPDMMV KVAGLGKILG 240
  241 PRGLMPNPKA GTVTANIPQA IEEFKKGKVE FRADKTGIVH IPFGKVNFTE EDLLINFLAA 300
  301 VKSVETNKPK GAKGVYWKSA HICSSMGPSI KLNIREMIDF KPPTAN

Type	Start	End	Confidence
Signal Peptide	1	21	0.89
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	346	0.99