YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SCP4_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANNNVYSVL KSLLLLLHLV FLSKQHVDSA SIVKFLPGFE GPLPFELETG YIGVGEEEEV  60
   61 QLFYYFIKSE RNPKEDPLLL WLTGGPGCSA ISGLLYQNGP LAMKLDVYNG TLPSLVSTTY 120
  121 SWTKTSSMIF LDQPVGTGFS YSRTQLFNKP SDTGEAKRIH EFLQKWLGKH QEFSSNPFYV 180
  181 GGDSYSGLVV PATVQEISKG NCQCCNRPIN LQGYVLGNPL TDCVYDCNYR VPFAHKMALI 240
  241 SDELYESLKR TCRGEYVNVH PHDTECLKFV EEFNKLTNRV CERHILHSCC ETETPSCYSY 300
  301 RFMLTTYWAN DETVRKALQI NKESIGEWTR CYRGIPYNHD IKSSVPYHMN NSIDGYRSLI 360
  361 YSGDHDIQVP FLGTQAWIRS LNYSIIDDWR PWMIKDQIAG YTTSYVNKMT FATVTGGGHT 420
  421 AEFTPKETFM MFQRWINGQP L

Type	Start	End	Confidence
Signal Peptide	1	29	0.97
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	441	0.99