YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR43_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.84
Transmembrane Helix	21	45	0.82
Non-Cytoplasmic	46	59	0.73
Transmembrane Helix	60	83	0.81
Cytoplasmic	84	90	0.55
Transmembrane Helix	91	111	0.92
Non-Cytoplasmic	112	136	0.72
Transmembrane Helix	137	159	0.78
Cytoplasmic	160	174	0.85
Transmembrane Helix	175	196	0.93
Non-Cytoplasmic	197	202	0.77
Transmembrane Helix	203	224	0.91
Cytoplasmic	225	326	0.86
Transmembrane Helix	327	347	0.90
Non-Cytoplasmic	348	363	0.75
Transmembrane Helix	364	386	0.88
Cytoplasmic	387	403	0.72
Transmembrane Helix	404	421	0.74
Non-Cytoplasmic	422	436	0.58
Transmembrane Helix	437	462	0.77
Cytoplasmic	463	473	0.61
Transmembrane Helix	474	496	0.88
Non-Cytoplasmic	497	514	0.67
Transmembrane Helix	515	538	0.90
Cytoplasmic	539	555	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGLVLSNDT EAKISGDCKR GGCITFPFMI ATLLGISVTS YGWVLNLIVF LIEEYNIKSI  60
   61 AAAQISNIVN GCLSMLPVVT AILADSFFGN IPVISASAFI SLLGIFLLTL ISSFENLRPR 120
  121 PCETGSILCQ SPSKLHLGVL YAALALVTAG TSGTRVALAS AGANQYDKPR DKGSFFNWYF 180
  181 LTVNTGAIIS ATAIVYTQEN ASWRLGFGLC AAANLISFIV FISGKRFYKH DKPMGSPFTS 240
  241 LIRVLVAAIL KIKVVTSSKE EDYHREVEKE SKTCIGMPSK SFRFLNRAAL KSEKDLNQED 300
  301 GLCHNPWRLC SVEEVEDFKS VLRVLPLWLA ILFVGTSIGV QASMTVLQAL VTDRGLDSKF 360
  361 KVPAGSLQVI VLISSCVFLV LNNWTIYPIY QKITHKQLTP LQQVGIGQVF NILSMAISAI 420
  421 VEAKRLKTVE NEHPMSVLWL LPPLVIVGIG DAFHYMANVA VFYGEFPESM RNTATSVTSV 480
  481 AFGISFYLST ALINLIQRTT AWLPDDINHG RVDNVYWVLV IGGVLNLGYF FVCSWYFTYR 540
  541 KIQDDNRQDP KDVTN