YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5123705, gi\|7...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.97
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVALRFFFFS SLLILLILSQ ALIMSVGSAS QIRLSSTFSI QEATIEDIRV AFNEKRLTSK  60
   61 QLVELYLEAI SKLNPILHAV IETNPDALIQ AEIADRERDL KNTTKLPILH GVPVLLKDSI 120
  121 STKDKLNTTA GSFALLGSVV ARDAGVVKRL RESGAVILGK ASLSEWAHFR SFSIPDGWSA 180
  181 PSQNSVVGIK PSVGLTSRAG VVPISLRQDS IGPICRTVSD AVHLLDAIVG YDPLDEATKT 240
  241 ASEFIPEGGY KQFLTTSGLK GKRLGIVMKH SSLLDHHIKT LRREGAIVIN NLTIPNIEVI 300
  301 VGGTDSGEEI ALLAEFKMSL NAYLKELVKS PVRSLADVIA YNEEFAEQEK VKEWGQEVFL 360
  361 TAEATSGMGE KEKTALQKMK ELSRNGIEKL IEENKLDAIV TLGSDLSSVL AIGGYPGINV 420
  421 PAGYDSGGVP YGISFGGLRF SEPKLIEIAF AFEQATLIRK PPKFIA

Type	Start	End	Confidence
Signal Peptide	1	29	0.91
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	466	0.99