YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UBA1A_ARATH
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKTLDKSKK RKLVKSKSTN FDKKQKINKQ QQQPESSTPY SSSSSSSDSS DSESDNEFDP  60
   61 EELRELLQPY SKDQLVDLVC SASRIGSSIY SAVVEAADRD VTHRKIFVYG LPWETTRETL 120
  121 VGVFEGYGEI EECTVVIDKA TGKAKGFGFV MFKTRKGAKE ALKEPKKRIL NRTATCQLAS 180
  181 MGPAASGKGH DQPGPVKISM GSMANHGQPQ QQQVQGQHVF NGGGMAASPF MLGNQYHPLY 240
  241 GAGMLGNPAL AAAAAAGGGY MYPMLAGALA HGGLGSDMVQ SSQMGGIGVD PSVGAAGLSA 300
  301 LGSYFRGQSL PSTYPDSDAG GKRGTGKDSD AGGSSFHGYS NYS

Type	Start	End	Confidence
Cytoplasmic	1	243	0.50
Transmembrane Helix	244	266	0.72
Non-Cytoplasmic	267	283	0.64
Transmembrane Helix	284	305	0.66
Cytoplasmic	306	343	0.71