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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SPPA1_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLLLLHAP HVIPRFSSSS SRSLVSAAAL YRRPLLVNPQ FSHIGPRLHS PYNRRFSARA  60
   61 FDDSPASSAE MEKEKQEQLL DGVSGKKDED YPTGEMEYEN RNAWEIFVVK FRMLFAYPWQ 120
  121 RVRKGSVLTM TLRGQISDQL KSRFNSGLSL PQLSENFVKA AYDPRIAGVY LHIDPLSCGW 180
  181 GKVEEIRRHI LNFKKSGKFI VGYISICGLK EYYLGCACNE LFAPPSAYSF LYGLTVQASF 240
  241 LGGVFEKVGI EPQVQRIGKY KSAGDQLSRK SISEENYEML SVLLDNIYSN WLDGVSDATG 300
  301 KKREDVENFI NQGVYEIEKL KEAGLIKDIR YDDEVITMLK ERLGVEKDKK LPTVDYKKYS 360
  361 GVKKWTLGLT GGRDQIAIIR AGGSISRVKG PLSTPGSAII AEQLIEKIRS VRESKKYKAA 420
  421 IIRIDSPGGD ALASDLMWRE IKLLAETKPV IASMSDVAAS GGYYMAMAAN AIVAENLTLT 480
  481 GSIGVVTARF TLAKLYEKIG FNKETISRGK YAELLGAEER PLKPEEAELF EKSAQHAYQL 540
  541 FRDKAALSRS MPVDKMEEVA QGRVWTGKDA HSRGLIDAVG GLSRAIAIAK QKANIPLNKK 600
  601 VTLVELSRPS TSLPDILSGI GSSVIGVDRT LKGLLDELTI TEGVQARMDG IMFQQLGRDS 660
  661 LATPIIDMLK DYLSSLR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle