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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GPDL1_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.77
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSRPSNPTK LVIRSSTLLF CGVVLIHLFA AQIDAQRSTS RWQTLNGDAP LVIARGGFSG  60
   61 LYPDSSIAAY QLATLTSVAD VVLWCDLQLT KDGLGICFPD LNLANASTID RVYPNREKSY 120
  121 SVNGVTTKGW FPNDFSLTEL QNFLLIRGIL SRTDRFDGNG YLISTIEDVV TTLNREGFWL 180
  181 NVQHDAFYEQ QNLSMSSFLL SVSRTVSIDF ISSPEVNFFK KITGSFGRNG PTFVFQFLGK 240
  241 EDFEPTTNRT YGSILSNLTF VKTFASGILV PKSYILPLDD EQYLVPHTSL VQDAHKAGLQ 300
  301 VYVSGFANDV DIAYNYSSDP VSEYLSFVDN GDFSVDGVLS DFPITASAAV DCFSHIGRNA 360
  361 TKQVDFLVIS KDGASGDYPG CTDLAYEKAI KDGADVIDCS VQMSSDGVPF CLRSIDLRNS 420
  421 IAALQNTFSN RSTSVPEISS VPGIFTFSLT WPEIQSLTPA ISNPFRVYRI FRNPREKNSG 480
  481 KLISLSQFLD LAKTYTSLSG VLISVENAAY LREKQGLDVV QAVLDTLTEA GYSNGTTTTK 540
  541 VMIQSTNSSV LVDFKKQSKY ETVYKIEETI GNIRDSAIED IKKFANAVVI NKDSVFPNSD 600
  601 SFLTGQTNVV ERLQKSQLPV YVELFRNEFV SQAYDFFSDA TVEINAYIYG AGINGTITEF 660
  661 PFTAARYKRN RCLGREEVPP YMLPVNPGGL LNVMSPLSLP PAQAPNQDFI EADVTEPPLS 720
  721 PVIAKAPTST PGTPSTIAQA PSGQTRLKLS LLLSVFFLSL LLL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle