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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Y1848_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.88
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVFFFPNSS MAILSVFLSL LLLSLPLPST QDLNADRTAL LSLRSAVGGR TFRWNIKQTS  60
   61 PCNWAGVKCE SNRVTALRLP GVALSGDIPE GIFGNLTQLR TLSLRLNALS GSLPKDLSTS 120
  121 SNLRHLYLQG NRFSGEIPEV LFSLSHLVRL NLASNSFTGE ISSGFTNLTK LKTLFLENNQ 180
  181 LSGSIPDLDL PLVQFNVSNN SLNGSIPKNL QRFESDSFLQ TSLCGKPLKL CPDEETVPSQ 240
  241 PTSGGNRTPP SVEGSEEKKK KNKLSGGAIA GIVIGCVVGF ALIVLILMVL CRKKSNKRSR 300
  301 AVDISTIKQQ EPEIPGDKEA VDNGNVYSVS AAAAAAMTGN GKASEGNGPA TKKLVFFGNA 360
  361 TKVFDLEDLL RASAEVLGKG TFGTAYKAVL DAVTVVAVKR LKDVMMADKE FKEKIELVGA 420
  421 MDHENLVPLR AYYFSRDEKL LVYDFMPMGS LSALLHGNRG AGRSPLNWDV RSRIAIGAAR 480
  481 GLDYLHSQGT STSHGNIKSS NILLTKSHDA KVSDFGLAQL VGSSATNPNR ATGYRAPEVT 540
  541 DPKRVSQKGD VYSFGVVLLE LITGKAPSNS VMNEEGVDLP RWVKSVARDE WRREVFDSEL 600
  601 LSLATDEEEM MAEMVQLGLE CTSQHPDQRP EMSEVVRKME NLRPYSGSDQ VNEAD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle