YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	KCS13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.15
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIAMADFKI LLLILILISL FELDLLHFHH DFFSPFPVKI GLLLISIFFY AYSTTRSKPV  60
   61 YLVDFSCHQP TDSCKISSET FFNMAKGAQL YTDETIQFMT RILNRSGLGD DTYSPRCMLT 120
  121 SPPTPSMYEA RHESELVIFG ALNSLFKKTG IEPREVGIFI VNCSLFNPNP SLSSMIVNRY 180
  181 KLKTDVKTYN LSGMGCSAGA ISVDLATNLL KANPNTYAVI VSTENMTLSM YRGNDRSMLV 240
  241 PNCLFRVGGA AVMLSNRSQD RVRSKYELTH IVRTHKGSSD KHYTCAEQKE DSKGIVGVAL 300
  301 SKELTVVAGD SLKTNLTALG PLVLPLSEKL RFILFLVKSK LFRLKVSPYV PDFKLCFKHF 360
  361 CIHAGGRALL DAVEKGLGLS EFDLEPSRMT LHRFGNTSSS SLWYELAYVE AKCRVKRGDR 420
  421 VWQLAFGSGF KCNSIVWRAL RTIPANESLV GNPWGDSVHK YPVHVT

Type	Start	End	Confidence
Cytoplasmic	1	7	0.79
Transmembrane Helix	8	28	0.87
Non-Cytoplasmic	29	35	0.67
Transmembrane Helix	36	53	0.74
Cytoplasmic	54	237	0.61
Transmembrane Helix	238	254	0.15
Non-Cytoplasmic	255	466	0.56