YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15240117, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKYNIKPKQ INKNKEMGMM RSSRTMGLGH CMVYVVVLSA IAATVTSYPY SSPYSSPQTP  60
   61 HYNSPSHEHK SPKYAPHPKP YVYISPPPPS YYSPSPKVNY KSPPPPNVYN SPPPPYYSPS 120
  121 PKVDYKSPPP PYVYSSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYYSPS PKVEYKSPPP 180
  181 PYVYNSPPPP YYSPSPKIEY KSPPPPYVYS SPPPPYYSPS PKVDYKSPPP PYVYNSPPPP 240
  241 YYSPSPKVDY KSPPPPYVYS SPPPPYFSPS PKVEYKSPPP PYVYNSPPPP YYSPSPKVEY 300
  301 KSPPPPYVYS SPPPPYYSPS PKVYYKSPPP PYVYSSPPPP YYSPSPKVDY KSPPPPYVYS 360
  361 SPPPPYYSPS PKVDYKSPPP PYVYSSPPPQ YYSPSPKVAY KSPPPPYVYS SPPPPYYSPS 420
  421 PKVAYKSPPP PYVYSSPPPP YYSPSPKVDY KSPPPPYVYS SPPPPYYSPS PKVEYKSPPP 480
  481 PYVYSSPPPP YYSPSPKVEY KSPPPPYVYS SPPPPYHSPS PKVNYKSPPP PYVYSSHPPP 540
  541 YYSPSPKVNY KSPPPPYVYS SPPPPYYSPS PKVNYKSPPP PYVYSSPPPP YYSPSPMVDY 600
  601 KSTPPPYVYS FPPLPYYSPS PKVDYKSPPL PYVYSSPPPL YYSPSPKVHY KSPPPPYVYN 660
  661 SPPPPYYSPS PKVTYKSPPP PYVYKAPYY

Type	Start	End	Confidence
Cytoplasmic	1	26	0.95
Transmembrane Helix	27	48	0.92
Non-Cytoplasmic	49	689	0.99