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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|15237657, gi|...
Protein type: Transmembrane
Type Confidence: 0.78
Topology Confidence: 0.51
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLDPEIAK TQEERRKMEA DLASLTSLTF DRDLYGGNDR ASYSTSIAPN EEDDANLDTT  60
   61 GSLVAQRLAS YTAPRSILND VARPHNEDDD VGFKPRQSIA EREGEYRNRR LNRVLSPDRV 120
  121 DAFAMGDKTP DASVRTYTDH MRETALQREK EETMRLIAKK KKEEEEAAAK HQKDSAPPPP 180
  181 ASSSSSSSKR RHRWDLPEED GAAAKKAKAA SSDWDLPDAA PGIGRWDAPT PGRVSDATPS 240
  241 AGRRNRWDET PTPGRVTDSD ATPGGGVTPG ATPSGVTWDG LATPTPKRQR SRWDETPATM 300
  301 GSATPMGGVT PGAAYTPGVT PIGGIDMATP TPGQLIFRGP MTPEQLNMQR WEKDIEERNR 360
  361 PLSDEELDAM FPKDGYKVLD PPATYVPIRT PARKLQQTPT PMATPGYVIP EENRGQQYDV 420
  421 PPEVPGGLPF MKPEDYQYFG SLLNEENEEE LSPEEQKERK IMKLLLKVKN GTPPQRKTAL 480
  481 RQLTDKAREL GAGPLFNKIL PLLMQPTLED QERHLLVKVI DRILYKLDEM VRPYVHKILV 540
  541 VIEPLLIDED YYARVEGREI ISNLSKAAGL ASMIAAMRPD IDNIDEYVRN TTARAFSVVA 600
  601 SALGIPALLP FLKAVCQSKR SWQARHTGIK IVQQIAILIG CAVLPHLRSL VEIIEHGLSD 660
  661 ENQKVRTITA LSLAALAEAA APYGIESFDS VLKPLWKGIR SHRGKVLAAF LKAIGFIIPL 720
  721 MDAIYASYYT KEVMVILIRE FQSPDEEMKK IVLKVVKQCV STEGVEPEYI RSDILPEFFR 780
  781 NFWTRKMALE RRNYKQLVET TVEVANKVGV ADIVGRVVED LKDESEQYRR MVMETIDKVV 840
  841 TNLGASDIDA RLEELLIDGI LYAFQEQTSD DANVMLNGFG AVVNALGQRV KPYLPQICGT 900
  901 IKWRLNNKSA KVRQQAADLI SRIAVVMKQC GEEQLMGHLG VVLYEYLGEE YPEVLGSILG 960
  961 ALKAIVNVIG MTKMTPPIKD LLPRLTPILK NRHEKVQENC IDLVGRIADR GAEFVPAREW1020
 1021 MRICFELLEM LKAHKKGIRR ATVNTFGYIA KAIGPQDVLA TLLNNLKVQE RQNRVCTTVA1080
 1081 IAIVAETCSP FTVLPALMNE YRVPELNVQN GVLKSLSFLF EYIGEMGKDY IYAVTPLLED1140
 1141 ALMDRDLVHR QTAASAVKHM ALGVAGLGCE DALVHLLNFI WPNIFETSPH VINAVMEAIE1200
 1201 GMRVALGAAV ILNYCLQGLF HPARKVREVY WKIYNSLYIG AQDTLVAAYP VLEDEQNNVY1260
 1261 SRPELTMFV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle