YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7378644, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.84
Transmembrane Helix	41	62	0.60
Non-Cytoplasmic	63	68	0.58
Transmembrane Helix	69	89	0.81
Cytoplasmic	90	103	0.65
Transmembrane Helix	104	125	0.92
Non-Cytoplasmic	126	134	0.75
Transmembrane Helix	135	160	0.85
Cytoplasmic	161	193	0.82
Transmembrane Helix	194	214	0.83
Non-Cytoplasmic	215	223	0.47
Transmembrane Helix	224	242	0.81
Cytoplasmic	243	309	0.96
Transmembrane Helix	310	333	0.89
Non-Cytoplasmic	334	344	0.78
Transmembrane Helix	345	366	0.95
Cytoplasmic	367	386	0.95
Transmembrane Helix	387	406	0.95
Non-Cytoplasmic	407	453	0.94
Transmembrane Helix	454	476	0.92
Cytoplasmic	477	498	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEETETRVF LSNEQHQEEE EEEEEEPSLP RSMVISLYLG YFLARWGART WEFSVALYMI  60
   61 YLWPNSLFLT AMYGVVESGS ATLFGPIVGQ MIDGMSYVKV LRLWLVTQNL SFIVAGGAVV 120
  121 ALLVVPDLKS QNFPVFATLV VLTNLSGAIG VLSTLAGTVL IERDWVVVMS EGHSPAVLTR 180
  181 MNSVIRGIDL SSKLLSPVIT GLIISFVSLR ASAITFAAWA TITVWIEYWL FISVYNGVPA 240
  241 IVQSDERRSL RSSQSQAEET DSASSFYVPL LHEEESYRNT QSRSRILRIL ERISESSFVS 300
  301 AWRNYLNQEI VLPGVSLALL FFTVLSFGTL MTATLEWKGI PTYIIGIGRG ISAGVGLAAT 360
  361 VLYPLMQSRI SPLRTGVWSF WSQKEKIASY MLMAGVAASR LGLWMFDLAV IQQMQDLVPE 420
  421 SDRCVVGGVQ NSLQSALDLM ANLLGIIVSN PKDFWMLTLI SFATVSLAGI LYTIHLYRIR 480
  481 KHLFHLEKIP LLNNFFAS