YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YSL6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.98
Transmembrane Helix	38	60	0.85
Non-Cytoplasmic	61	65	0.74
Transmembrane Helix	66	87	0.87
Cytoplasmic	88	105	0.87
Transmembrane Helix	106	129	0.89
Non-Cytoplasmic	130	153	0.96
Transmembrane Helix	154	176	0.90
Cytoplasmic	177	270	0.70
Transmembrane Helix	271	293	0.86
Non-Cytoplasmic	294	315	0.80
Transmembrane Helix	316	337	0.78
Cytoplasmic	338	391	0.83
Transmembrane Helix	392	412	0.85
Non-Cytoplasmic	413	416	0.66
Transmembrane Helix	417	440	0.72
Cytoplasmic	441	447	0.46
Transmembrane Helix	448	463	0.62
Non-Cytoplasmic	464	464	0.36
Transmembrane Helix	465	487	0.76
Cytoplasmic	488	504	0.55
Transmembrane Helix	505	527	0.91
Non-Cytoplasmic	528	563	0.48
Transmembrane Helix	564	582	0.89
Cytoplasmic	583	600	0.35
Transmembrane Helix	601	624	0.83
Non-Cytoplasmic	625	634	0.45
Transmembrane Helix	635	660	0.74
Cytoplasmic	661	676	0.44

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTEIPRSAE ISEALLPPES EKTVTATEEH VPEWKEQITI RGLTVSALLG TLFCIITHKL  60
   61 NLTVGIIPSL NVAAGLLGFF FVKSWTGFLS KLGFTVKPFT KQENTVIQTC VVACYGLAFS 120
  121 GGFGSYLIAM DEKTYKLIGA DYPGNHAEDV INPGLWWMIG FLFVVSFLGL FSLVPLRKVM 180
  181 VLDYKLTYPS GTATAMLINS FHTNTGAELA GNQVKCLGKY LSLSLIWSCF KWFFSGIGDA 240
  241 CGFDNFPTLG LTLFKNTFYF DFSPTYIGCG LICPHIVNCS VLLGAIISWG ILWPFVSQHA 300
  301 GDWYPADLGS NDFKGLYGYK VFIAIAIILG DGLYNLVKII AVTVKELCSS RSRRLNLPIV 360
  361 TDGVDDSEAS EILLVKKKRD EVFLKDRIPL EFAIAGYVGL AAISTATIPI IFPPLKWYFV 420
  421 LCSYFIAPAL AFCNSYGTGL TDWSLASTYG KIGLFIIASV VGSDGGVIAG LAACGVMMSI 480
  481 VSTAADLMQD FKTGYLTLSS AKSMFVSQLV GTAMGCVIAP LTFWLFWTAF DIGDPNGPYK 540
  541 APYAVIFREM AILGIEGFAE LPKHCLALCY GFFIAALIVN LLRDITPPKI SQFIPIPMAM 600
  601 AVPFYIGAYF AIDMFVGTVI LFVWERINRK DAEDFAGAVA SGLICGDGIW TIPSAILSIL 660
  661 RINPPICMYF GPSSAR