YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR25_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	52	0.75
Transmembrane Helix	53	67	0.54
Non-Cytoplasmic	68	80	0.55
Transmembrane Helix	81	99	0.84
Cytoplasmic	100	108	0.66
Transmembrane Helix	109	129	0.90
Non-Cytoplasmic	130	147	0.74
Transmembrane Helix	148	169	0.83
Cytoplasmic	170	189	0.93
Transmembrane Helix	190	210	0.89
Non-Cytoplasmic	211	218	0.84
Transmembrane Helix	219	241	0.91
Cytoplasmic	242	318	0.96
Transmembrane Helix	319	339	0.89
Non-Cytoplasmic	340	358	0.86
Transmembrane Helix	359	377	0.96
Cytoplasmic	378	396	0.87
Transmembrane Helix	397	418	0.91
Non-Cytoplasmic	419	446	0.87
Transmembrane Helix	447	469	0.82
Cytoplasmic	470	479	0.90
Transmembrane Helix	480	502	0.91
Non-Cytoplasmic	503	525	0.91
Transmembrane Helix	526	546	0.95
Cytoplasmic	547	555	0.87

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSIGDNET GAIVSNENVE FSVDFRGNPS IRSSSGAWKS SGFTMCAEVA EKFAYFGIAS  60
   61 NLITYFTEAL GESTAVAASN VNLWLGTAAF LPLIWGSIAD SFLGRFRTIL LTSSFYIMGL 120
  121 GLLTFSATIP SLCNDQETRE SCVSQVKVII FFCALYLIAL GEGGFKVCLR AFGADQFDEQ 180
  181 DPNESKAKSS YFNWLYFAIS IGILTTRLVT NYVQENLSWA LGYAIPCLSM MLALFLFLLG 240
  241 IKTYRFSTGG EGRQGKKHDN PFVRIGRVFV AAARNRRQTP SDTCLLLPNE STKKFRFLDR 300
  301 AVISCDSYEV EEAKAVLSLI PIWLCSLVFG IVFAQSPTFF TKQGSTMDRS ISSTLQVPAA 360
  361 TLQCFISLAI LVFIPIYDRL FVPIARSITR KPAGITTLQR ISTGIFLSII SMVIAALVEM 420
  421 KRLKTARDHG LVDSPKATVP MSVCWLIPQY ILFGVSDVFT MVGLQEFFYG EVPPQLRSMG 480
  481 LALYLSIIGI GNFLSSFMVS VIEEATSQSG QVSWFSNNLN QAHLDYFYWL LACLSSLAFI 540
  541 FTVYFAKSYL YNSPK