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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SYA_ARATH
Protein type: Globular with Signal Peptide
Type Confidence: 0.74
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLVKAASLL ISSTKPPSRV FYSSHLRRPF FSHFRFSSSS STSSSVAVMP GSEPSETQWP  60
   61 AKRVRDTYVD FFRGKGHKFW PSSPVVPHND PTLLFANAGM NQYKPIFLGT ADPNTELSKL 120
  121 SRACNTQKCI RAGGKHNDLD DVGKDTYHHT FFEMLGNWSF GDYFKKEAIE WAWELLTKVY 180
  181 GLPTDRIYAT YFGGDEKAGL QPDNEARDIW LKVLPSGRVL PFGCKDNFWE MGDTGPCGPC 240
  241 TEIHYDRIGN RDAASLVNND DPTCLEIWNL VFIQFNRESD GSLKPLPAKH VDTGMGFERL 300
  301 TSVLQNKMSN YDTDVFMPIF DDIQKATGAR PYSGKVGPED VDRVDMAYRV VADHIRTLSF 360
  361 AIADGSRPGN EGREYVLRRI LRRAVRYGKE ILKAEEGFFN GLVSSVIRVM GDVFTELKEH 420
  421 EKKITDIIKE EEASFCKTLA KGIEKFRKAG QAVQGNTLSG DDAFILWDTY GFPLDLTQLM 480
  481 AEERGLLVDV DGFNKAMEEA RERSRSAQNK QAGGAIVMDA DATSTLHKAG VSATDDSFKY 540
  541 IWFQDHESEL KAIYTGSTFL ESSAASDNVG LVLGSTSFYA EQGGQIFDTG LIEGSFGTFN 600
  601 VCNVQIFGGF VLHIGYLSKE TGEVSVGDKV ICKVDYERRK LIAPNHTCTH MLNYALKEVL 660
  661 GDHIDQKGSI VLPEKLRFDF SHGKPVDPED LRRIESIVNK QIKDELDVFS KEAVLSEAKR 720
  721 IKGLRAVFGE VYPDPVRVVS IGRKVEDLLA DPENNEWSLL SSEFCGGTHI TNTREAKAFA 780
  781 LLSEEGIAKG IRRVTAVTTE CAFDALNAAS LLEREVEDAS RAEGSALEKK VSALKSRVDA 840
  841 AIIPAAKKAD IRTKIASLQN EVRKAQKKIA EQNLKKSVKL ATEAAESAAS DGKTFCIIQL 900
  901 DVGLDAAAVR EAVSKVMEKK GMSIMVFSTD ESTNKAVVCA GVPEKSDQFK PLDVTEWLTT 960
  961 ALGPLKGRCG KGKGGLASGQ GTDASQVQAA LDMASSFASM KLN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle