YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CP29A_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSASASSLSA FNPKSLPLCV SRPASVSVLP PSLSFKLHSD HLVSIFASSA LKCSSPAEYP  60
   61 SRFVRNVAVS SDFEVEEDDM FADGDDSAPV ERNSFSPDLK LFVGNLSFNV DSAQLAQLFE 120
  121 SAGNVEMVEV IYDKVTGRSR GFGFVTMSTA AEVEAAAQQF NGYEFEGRPL RVNAGPPPPK 180
  181 REESFSRGPR SGGYGSERGG GYGSERGGGY GSERGGGYGS ERGGGYGSQR SGGGYGGSQR 240
  241 SSYGSGSGSG SGSGSGNRLY VGNLSWGVDD MALENLFNEQ GKVVEARVIY DRDSGRSKGF 300
  301 GFVTLSSSQE VQKAINSLNG ADLDGRQIRV SEAEARPPRG QF

Type	Start	End	Confidence
Signal Peptide	1	34	0.64
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	342	0.99