YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RCL1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVMMKKMKGS QSFRQRLLLS TLSSTPISID EIRADETIPG LRPHEVNLLR LLEIVTDDAV  60
   61 VDINETGTRL KYKPGTIVGG KNLVHSCSLS RSIGYYLEPL LLLGLFGKKP LSIRLKGITN 120
  121 DPRDASVDTF RSTTLNIIKR FGVPAEDLEL KIEARGVAPN GGGEVLLTVP NIKTLSAVHW 180
  181 VEEGMVKKIR GTTFSTRVTS DFEHSMRFAA RGIFNNLLPD VHIFQDHRAG AQAGKSPGYG 240
  241 ISLAAETTTG CFISADTTVS CERPDETGEL DVEKKERSPA EDTGVEVASW LLQEIEKGGV 300
  301 VDSTHQGLLF LLCALSEQDV SKVRVGTLSP YAVETLRNIK EFLGVKFAIK PDPLTGTVIL 360
  361 KCTGSGLINL SRKLS

Type	Start	End	Confidence
Signal Peptide	1	34	0.80
N-region	1	25
H-region	26	31
C-region	32	34
Cleavage Site	34	35
Non-Cytoplasmic	35	375	0.99