YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PIP13_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKEEDVRV GANKFPERQP IGTSAQTDKD YKEPPPAPFF EPGELSSWSF YRAGIAEFIA  60
   61 TFLFLYITVL TVMGVKRAPN MCASVGIQGI AWAFGGMIFA LVYCTAGISG GHINPAVTFG 120
  121 LFLARKLSLT RAVFYIVMQC LGAICGAGVV KGFQPNPYQT LGGGANTVAH GYTKGSGLGA 180
  181 EIIGTFVLVY TVFSATDAKR SARDSHVPIL APLPIGFAVF LVHLATIPIT GTGINPARSL 240
  241 GAAIIYNKDH AWDDHWIFWV GPFIGAALAA LYHQLVIRAI PFKSRS

Type	Start	End	Confidence
Cytoplasmic	1	52	0.83
Transmembrane Helix	53	74	0.86
Non-Cytoplasmic	75	89	0.75
Transmembrane Helix	90	113	0.85
Cytoplasmic	114	131	0.73
Transmembrane Helix	132	153	0.91
Non-Cytoplasmic	154	174	0.88
Transmembrane Helix	175	194	0.92
Cytoplasmic	195	206	0.86
Transmembrane Helix	207	227	0.89
Non-Cytoplasmic	228	254	0.89
Transmembrane Helix	255	276	0.92
Cytoplasmic	277	286	0.91