YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NIP42_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSHGEEIED EQISRIEKGN CKDSQGGMET AICSSPSIVC LTQKLIAEMI GTYFIIFSGC  60
   61 GVVVVNVLYG GTITFPGICV TWGLIVMVMI YSTGHISGAH FNPAVTVTFA VFRRFPWYQV 120
  121 PLYIGAQLTG SLLASLTLRL MFNVTPKAFF GTTPTDSSGQ ALVAEIIISF LLMFVISGVA 180
  181 TDSRATGELA GIAVGMTIIL NVFVAGPISG ASMNPARSLG PAIVMGRYKG IWVYIVGPFV 240
  241 GIFAGGFVYN FMRFTDKPLR ELTKSASFLR SVAQKDNASK SDG

Type	Start	End	Confidence
Cytoplasmic	1	49	0.94
Transmembrane Helix	50	73	0.86
Non-Cytoplasmic	74	77	0.68
Transmembrane Helix	78	101	0.76
Cytoplasmic	102	119	0.69
Transmembrane Helix	120	142	0.88
Non-Cytoplasmic	143	160	0.86
Transmembrane Helix	161	180	0.95
Cytoplasmic	181	188	0.82
Transmembrane Helix	189	211	0.91
Non-Cytoplasmic	212	229	0.91
Transmembrane Helix	230	252	0.92
Cytoplasmic	253	283	0.94