YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	IRT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.76
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.67
Transmembrane Helix	7	25	0.70
Non-Cytoplasmic	26	47	0.83
Transmembrane Helix	48	68	0.91
Cytoplasmic	69	80	0.78
Transmembrane Helix	81	101	0.94
Non-Cytoplasmic	102	120	0.89
Transmembrane Helix	121	142	0.88
Cytoplasmic	143	195	0.91
Transmembrane Helix	196	218	0.85
Non-Cytoplasmic	219	226	0.77
Transmembrane Helix	227	248	0.89
Cytoplasmic	249	257	0.81
Transmembrane Helix	258	281	0.90
Non-Cytoplasmic	282	288	0.81
Transmembrane Helix	289	310	0.93
Cytoplasmic	311	327	0.85
Transmembrane Helix	328	349	0.90
Non-Cytoplasmic	350	350	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTKLVYIL LILFTFTVSP AISTAPEHCD SGFDNPCINK AKALPLKIVA IVAILTTSLI  60
   61 GVTSPLFSRY ISFLRPDGNG FMIVKCFSSG IILGTGFMHV LPDSFEMLSS KCLSDNPWHK 120
  121 FPFAGFVAMM SGLVTLAIDS ITTSLYTGKN SVGPVPDEEY GIDQEKAIHM VGHNHSHGHG 180
  181 VVLATKDDGQ LLRYQVIAMV LEVGILFHSV VIGLSLGATN DSCTIKGLII ALCFHHLFEG 240
  241 IGLGGCILQA DFTNVKKFLM AFFFTGTTPC GIFLGIALSS IYRDNSPTAL ITIGLLNACS 300
  301 AGMLIYMALV DLLATEFMGS MLQGSIKLQI KCFTAALLGC AVMSVVAVWA