YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAD3E_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVAMDQRTN VNGDPGAGDR KKEERFDPSA QPPFKIGDIR AAIPKHCWVK SPLRSMSYVV  60
   61 RDIIAVAALA IAAVYVDSWF LWPLYWAAQG TLFWAIFVLG HDCGHGSFSD IPLLNSVVGH 120
  121 ILHSFILVPY HGWRISHRTH HQNHGHVEND ESWVPLPERV YKKLPHSTRM LRYTVPLPML 180
  181 AYPLYLCYRS PGKEGSHFNP YSSLFAPSER KLIATSTTCW SIMFVSLIAL SFVFGPLAVL 240
  241 KVYGVPYIIF VMWLDAVTYL HHHGHDEKLP WYRGKEWSYL RGGLTTIDRD YGIFNNIHHD 300
  301 IGTHVIHHLF PQIPHYHLVD ATKAAKHVLG RYYREPKTSG AIPIHLVESL VASIKKDHYV 360
  361 SDTGDIVFYE TDPDLYVYAS DKSKIN

Type	Start	End	Confidence
Cytoplasmic	1	57	0.98
Transmembrane Helix	58	81	0.81
Non-Cytoplasmic	82	110	0.61
Transmembrane Helix	111	133	0.68
Cytoplasmic	134	212	0.86
Transmembrane Helix	213	238	0.80
Non-Cytoplasmic	239	242	0.69
Transmembrane Helix	243	263	0.80
Cytoplasmic	264	386	0.89