YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAD3C_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANLVLSECG IRPLPRIYTT PRSNFLSNNN KFRPSLSSSS YKTSSSPLSF GLNSRDGFTR  60
   61 NWALNVSTPL TTPIFEESPL EEDNKQRFDP GAPPPFNLAD IRAAIPKHCW VKNPWKSLSY 120
  121 VVRDVAIVFA LAAGAAYLNN WIVWPLYWLA QGTMFWALFV LGHDCGHGSF SNDPKLNSVV 180
  181 GHLLHSSILV PYHGWRISHR THHQNHGHVE NDESWHPMSE KIYNTLDKPT RFFRFTLPLV 240
  241 MLAYPFYLWA RSPGKKGSHY HPDSDLFLPK ERKDVLTSTA CWTAMAALLV CLNFTIGPIQ 300
  301 MLKLYGIPYW INVMWLDFVT YLHHHGHEDK LPWYRGKEWS YLRGGLTTLD RDYGLINNIH 360
  361 HDIGTHVIHH LFPQIPHYHL VEATEAAKPV LGKYYREPDK SGPLPLHLLE ILAKSIKEDH 420
  421 YVSDEGEVVY YKADPNLYGE VKVRAD

Type	Start	End	Confidence
Cytoplasmic	1	119	0.98
Transmembrane Helix	120	138	0.89
Non-Cytoplasmic	139	145	0.58
Transmembrane Helix	146	166	0.68
Cytoplasmic	167	178	0.61
Transmembrane Helix	179	195	0.45
Non-Cytoplasmic	196	231	0.43
Transmembrane Helix	232	250	0.69
Cytoplasmic	251	275	0.65
Transmembrane Helix	276	299	0.80
Non-Cytoplasmic	300	305	0.58
Transmembrane Helix	306	325	0.55
Cytoplasmic	326	446	0.77