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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CNGC8_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.31
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKSQYISGH REKFVRLDDT DSRVSMSSNA TGMKKRSCFG LFNVTSRGGG KTKNTSKSFR  60
   61 EGVKIGSEGL KTIGKSFTSG VTRAVFPEDL RVSEKKIFDP QDKTLLLWNR MFVISCILAV 120
  121 SVDPLFFYLP IVDNSKNCIG IDSKLAVTTT TLRTIIDVFY LTRMALQFRT AYIAPSSRVF 180
  181 GRGELVIDPA KIAERYLTRY FIVDFLAVLP LPQIAVWKFL HGSKGTDVLP TKQALLHIVI 240
  241 TQYIPRFVRF IPLTSELKKT AGAFAEGAWA GAAYYLLWYM LASHITGAFW YMLSVERNDT 300
  301 CLRSACKVQP DPKVCVQILY CGSKLMSSRE TDWIKSVPDL FKNNCSAKSD ESKFNYGIYS 360
  361 QAVSSGIVSS TTFFSKFCYC LWWGLQNLST LGQGLQTSTY PGEVLFSIAI AVAGLLLFAL 420
  421 LIGNMQTYLQ SLTVRLEEMR IKRRDSEQWM HHRSLPQNLR ERVRRYDQYK WLETRGVDEE 480
  481 NIVQSLPKDL RRDIKRHLCL NLVRRVPLFA NMDERLLDAI CERLKPSLYT ESTYIVREGD 540
  541 PVNEMLFIIR GRLESVTTDG GRSGFFNRGL LKEGDFCGEE LLTWALDPKA GSNLPSSTRT 600
  601 VKALTEVEAF ALEAEELKFV ASQFRRLHSR QVQQTFRFYS QQWRTWAACF IQAAWRRHLR 660
  661 RKIAELRRKE EEEEEMDYED DEYYDDNMGG MVTRSDSSVG SSSTLRSTVF ASRFAANALK 720
  721 GHKLRVTESS KSLMNLTKPS EPDFEALDTD DLN

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle